RetrogeneDB ID: | retro_ocun_1668 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018751:453365..453692(+) | ||
Located in intron of: | ENSOCUG00000016664 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX6A1 | ||
Ensembl ID: | ENSOCUG00000009873 | ||
Aliases: | COX6A1, COX6A | ||
Description: | cytochrome c oxidase subunit VIa (COX6A1), nuclear gene encoding mitochondrial protein, mRNA [Source:RefSeq mRNA;Acc:NM_001170883] |
Percent Identity: | 74.31 % |
Parental protein coverage: | 99.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAAAWSRVSRLLGRSRLQVGRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVYLKSHHEEHERPE |
.A.AA.S.VSR.LG.S.LQ.G.PMS.G.HG...S.R.WK.LT.FV.LP.VG.SMLN.YLKSHHEEHER.. | |
Retrocopy | VAVAAGSTVSRHLGQSHLQMGWPMSGGTHGNKRSTRTWKVLTNFVTLPRVGMSMLNIYLKSHHEEHERSK |
Parental | FIAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE |
FI.YPHLR.RSKPFP..DGNHTLFHNPHVNPLPTGYEDE | |
Retrocopy | FITYPHLRVRSKPFPQRDGNHTLFHNPHVNPLPTGYEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 201 .88 RPM |
SRP017611_kidney | 0 .10 RPM | 242 .44 RPM |
SRP017611_liver | 0 .00 RPM | 50 .02 RPM |