RetrogeneDB ID: | retro_ocun_168 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:93083766..93084393(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000017511 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000012476 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:G1T3D9] |
Percent Identity: | 93.2 % |
Parental protein coverage: | 99.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ITKDEYKEVIKNWGQKKPYHK-RKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECC |
I..D......K..G..KPYHK.RKYELGRPAANTKIGPRRIHTV.VRGGNKKYRALRLDVGNFSWGSECC | |
Retrocopy | ISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVGVRGGNKKYRALRLDVGNFSWGSECC |
Parental | TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRS |
TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRS | |
Retrocopy | TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRS |
Parental | KKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK |
KKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK | |
Retrocopy | KKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 23 .01 RPM | 95 .53 RPM |
SRP017611_kidney | 54 .23 RPM | 185 .48 RPM |
SRP017611_liver | 16 .57 RPM | 61 .89 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
DN886667 | 93083757 | 93083952 | 98.5 | 192 | 3 | 189 |