>retro_ocun_1682
GATTTAATTTATTGTGGTGATAGAGTCCAGAAAGGCCATGAAAACTATGTGAAAATTTTACTGAATGTGGGAGGCATGCT
AGTCATGCCTATAGAAGATCAGCTAACACAGATTATGTGACTGGGACAAAACATTTGGGAAAGTAAAAATATCCTTTTTG
TTTCATTTGCTCCACTTGTGCAGCCAAGTAAGAATGGTTATGGCAAGCCTGCTTCTGTGGGACTCCCCCCTGTGCTGTCA
GGAACCTGCAGGACTTGGCCTGTATTTACATTCACCGCCCACTTAGAAATTTCATAAACAATGAGACGCAGGCCAAAGGG
TTTTCCCAAAATATTCCACCCAAAAGGAAAAGAGAGTGAAAGAGAGTGAAACAGAATTAACAGGCACATCCTTGTAGGTA
ATCAGCTTATGCCTCAGCCTCTGGACAGTAAGGAGGATGAGAAAATGGAAGATCCCAAAGAAGAGGAGAAAGACCACAGT
GAAGCCATGAAGCCAGAAGAGCTGCCTCAGAATTCACAGAGAGAGAAAATCATGAAGCTGTCCTCCCTGAGACTTTAAAA
GCTTGCTTGAGATATTTTACAGACAAA
ORF - retro_ocun_1682 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.13 % |
Parental protein coverage: |
55.18 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | DRIYCGAGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGKP |
| D.IYCG..VQK.HENY.KILL.VGG.LVMPIEDQLTQIM..GQN.WESKNIL.VSFAPLVQPSKN..GKP |
Retrocopy | DLIYCGDRVQKGHENYVKILLNVGGMLVMPIEDQLTQIM*LGQNIWESKNILFVSFAPLVQPSKNGYGKP |
|
Parental | DSVGLPP-CAVRNLQDLARIYIRRTLRNFINDEMQAKGIPQRAP-PKRKR-KRVKQRINTYVFVGNQLIP |
| .SVGLPP.CAVRNLQDLA.IYI.R.LRNFIN.E.QAKG..Q..P.PK.K...R...RIN....VGNQL.P |
Retrocopy | ASVGLPP<CAVRNLQDLACIYIHRPLRNFINNETQAKGFSQNIP>PKGKESERE*NRINRHILVGNQLMP |
|
Parental | QPLDSEEDEKMEEDHKEEEEREHSEAMKPEEPPQNLLREKIMKLP-LPESLKAYLTYFRDK |
| QPLDS.EDEKME.....EEE..HSEAMKPEE.PQN..REKIMKL..LPE.LKA.L.YF.DK |
Retrocopy | QPLDSKEDEKMED--PKEEEKDHSEAMKPEELPQNSQREKIMKLS<LPETLKACLRYFTDK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
90 .95 RPM |
SRP017611_kidney |
0 .00 RPM |
142 .00 RPM |
SRP017611_liver |
0 .00 RPM |
131 .95 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1682 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1682 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1682 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.