RetrogeneDB ID: | retro_ocun_1691 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018773:660103..661156(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000010667 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.51 % |
Parental protein coverage: | 94.16 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | MLSSCARLAPSTVRLVHSLDCSSSRSFMDLKALISSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLT |
MLSSC.RL.P.TV....SL.C.SS.S.M.LK.LISSLNDFASLS.AESWDNVGLLVEPSPP.T.N.LFLT | |
Retrocopy | MLSSCLRLVPITVWFIQSLNCNSSCSVMGLKTLISSLNDFASLSSAESWDNVGLLVEPSPPQTINVLFLT |
Parental | NDLTEPVMEEALQKKADLILSYHPPIFLPMKRITWKSWKERLVIRALENRVAIYSPHTAYDAAPQGVNNW |
NDLTE.VMEEAL.KKA.LI.SY.PPIFL..K.ITW.S..E.LV.RALENRV.IYS.HTAYDAAPQG..NW | |
Retrocopy | NDLTEQVMEEALHKKAHLIFSYLPPIFLHIKPITWMS*EEHLVFRALENRVGIYSLHTAYDAAPQGLKNW |
Parental | LSKGLGACTSRPICPSKAHSYPTEGTHRVEFNVNHTQDLDKVVSAVREIEGVSVTSFSARTDGEEQTR-I |
LSKGLGACTSR.I.PSK.......G.H.V.FN...TQD.DKVVSAVRE.E...V.SFSAR.D.EE....I | |
Retrocopy | LSKGLGACTSRYIYPSK---LSCRGNH*VQFNIKNTQDMDKVVSAVREAEVFPVISFSARID-EEKNK>I |
Parental | SLNCTEKALMQVVAQLSQNRQLYQRTEILSLEKPL-LLHTGMGRLCTLDESVSLATMIERIKRHLKLTHI |
SLNCTE..LMQVVAQLS.N..LYQRTEILSL.KPL..LHTGMG..CTLDESV.LAT.IE.IKR.LKLTHI | |
Retrocopy | SLNCTEETLMQVVAQLS*NG*LYQRTEILSLQKPL<ALHTGMGGSCTLDESVALATIIEQIKRNLKLTHI |
Parental | RLALGVERTLESRVEVVALCAGSGSSVLRGVEADLYLTGEMSHHDVLDATSRGISVILCEHSNTERGFLS |
.LALGV.RTL.S.V..VALCAGSGSSVL.GVEADLYLTG.M.HHD.LDATS.GI..ILCEHSN.E.GFLS | |
Retrocopy | QLALGVGRTLAS*VKSVALCAGSGSSVLQGVEADLYLTGGMFHHDGLDATSQGINAILCEHSNSE*GFLS |
Parental | DLRDMLG |
DL.DMLG | |
Retrocopy | DLCDMLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .71 RPM |
SRP017611_liver | 0 .00 RPM | 5 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000023186 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006639 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006935 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010667 | 16 retrocopies | |
Pongo abelii | ENSPPYG00000013063 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000704 | 1 retrocopy |