>retro_ocun_1702
GTGGAGGTAGAGGAGATCTTCAAGAAGTCACCTTTCCTGGTACCGGACGACGGTGTTGGCATCATGGACGGATCCCGTGA
AGGCATCTTAGCTTGGGTTACTGTGAATTTTCTGACAGGTCAGCTGCATGGCCGTGGCCAGGAGACTGTGGGGACCCTGG
ACCTGAGGGGGGCCTCCACCCAAATCACATTTCTGCCGAAGTTTAAGAAAACCCTGGAACAAACCCCTAAGGACTACCTC
ACTTCCTTTGAGATGTTTAACAGCATTTATAAGCTCTATACACATAGTTACTTGGGATTTGGATTGAAAGCTGCAAGACT
AGCAACGCTGGGCACCCTGGAGACAGAAGGAATTGATGGACACACTTTCCAAGGTGCCTGTCTACCGAGATGGTTGGAAG
CAGAGTGGATCTTTGAGGGTGTAAAATACCAATATGGTGGCAACCAAGAAGGGGACATGGGCTTTGAGCCCTGCTCTGCT
GAAGTGCTGAGAGTGGTACAAGGGAAGCTGCCCCAGCCAGAGGAGGTCCAGAGAAGCTCCTTCTATGCATCCTGTTACTA
CTGCAATCGGGCTGTTGACACGGGCATGATCGGTTATGCAAAGGGGGTGTTTTAAAGGTTGAAGATTTTGAAAGAAAGGC
CAGGGAAGTGTGTGATAACCTGGAGAAGTTCACCTCAGGCAGCCCTTTCCTGTGTATGGATCTCAGCTACATCACAGCCC
TGCTGAAGGACGGCTTTGGCTTTGCGGACGGCACCGTCTTACAGCTCGCAAAGAAACTGAACAACAGAGATGGGCTGGGC
CTTGGGAGCCACATTTCACCTGTTGCAGTCTCTGGGCATCTCCTAC
ORF - retro_ocun_1702 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.88 % |
Parental protein coverage: |
66.12 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | LEVEEIFKKSPFLVPDDSVGIMDGSDEGILAWVTVNFLTGQLHGRGQETVGTLDLGGASTQITFLPKFKK |
| .EVEEIFKKSPFLVPDD.VGIMDGS.EGILAWVTVNFLTGQLHGRGQETVGTLDL.GASTQITFLPKFKK |
Retrocopy | VEVEEIFKKSPFLVPDDGVGIMDGSREGILAWVTVNFLTGQLHGRGQETVGTLDLRGASTQITFLPKFKK |
|
Parental | TLEQTPKDYLTSFEMFNSTYKLYTHSYLGFGLKAARLATLGALETEGIDGHTFRSACLPRWLEAEWIFGG |
| TLEQTPKDYLTSFEMFNS.YKLYTHSYLGFGLKAARLATLG.LETEGIDGHTF..ACLPRWLEAEWIF.G |
Retrocopy | TLEQTPKDYLTSFEMFNSIYKLYTHSYLGFGLKAARLATLGTLETEGIDGHTFQGACLPRWLEAEWIFEG |
|
Parental | VKYQYGGNQEGDMGFEPCYAEVLRVVQGKLHQPEEVQRSSFYAFSYYYDRAVDTGMIDYA-KGGVLKVED |
| VKYQYGGNQEGDMGFEPC.AEVLRVVQGKL.QPEEVQRSSFYA..YY..RAVDTGMI.YA.KGGVLKVED |
Retrocopy | VKYQYGGNQEGDMGFEPCSAEVLRVVQGKLPQPEEVQRSSFYASCYYCNRAVDTGMIGYA<KGGVLKVED |
|
Parental | FERKAREVCDNLEKFSSGSPFLCMDLSYITALLKDGFGFADSTVLQLAKKVNNIETGWALG-ATFHLLQS |
| FERKAREVCDNLEKF.SGSPFLCMDLSYITALLKDGFGFAD.TVLQLAKK.NN...G..LG.ATFHLLQS |
Retrocopy | FERKAREVCDNLEKFTSGSPFLCMDLSYITALLKDGFGFADGTVLQLAKKLNN-RDGLGLG>ATFHLLQS |
|
Parental | LGISY |
| LGISY |
Retrocopy | LGISY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .06 RPM |
7 .12 RPM |
SRP017611_kidney |
0 .20 RPM |
102 .57 RPM |
SRP017611_liver |
0 .08 RPM |
32 .53 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1702 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1702 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1702 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.