RetrogeneDB ID: | retro_ocun_1712 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018800:468101..468569(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027093 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAB1 | ||
Ensembl ID: | ENSOCUG00000008457 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa [Source:HGNC Symbol;Acc:7694] |
Percent Identity: | 98.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAARVLSSCVRRLSAAFSPLPRVPALASVRPLGTVLCSAGTRTRLGALQPASVLVQVPGSVTQLCRQYSD |
MAARVLSSCV.RLSAAFSPLP.VPALASVRPLGTVLCSAGTRTRLGALQPASVLVQVPGSVTQLCRQYSD | |
Retrocopy | MAARVLSSCVLRLSAAFSPLPHVPALASVRPLGTVLCSAGTRTRLGALQPASVLVQVPGSVTQLCRQYSD |
Parental | APPLTLEGIRDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC |
APPLTLEGIRD.VLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC | |
Retrocopy | APPLTLEGIRDHVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC |
Parental | PQEIVDYIADKKDVYE |
PQEIVDYIADKKDVYE | |
Retrocopy | PQEIVDYIADKKDVYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 5 .13 RPM | 40 .56 RPM |
SRP017611_kidney | 7 .60 RPM | 59 .29 RPM |
SRP017611_liver | 0 .92 RPM | 10 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014304 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017667 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020616 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012038 | 2 retrocopies | |
Felis catus | ENSFCAG00000013241 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000006320 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012681 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000020522 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016352 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030869 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008457 | 1 retrocopy |
retro_ocun_1712 ,
|
Rattus norvegicus | ENSRNOG00000018129 | 2 retrocopies |