RetrogeneDB ID: | retro_ocun_1728 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018826:205890..206156(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NME1 | ||
Ensembl ID: | ENSOCUG00000022135 | ||
Aliases: | None | ||
Description: | NME/NM23 nucleoside diphosphate kinase 1 (NME1), mRNA [Source:RefSeq mRNA;Acc:NM_001204749] |
Percent Identity: | 63.33 % |
Parental protein coverage: | 58.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TMANTERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVSLKLMQASED-LLREHYIDLKDRPFFPGLVKYM |
T..NTE.TFI.I.P......LV.E..K..EQKGF.LVSLKLMQAS...LL..HY.D.KD...F...VK.M | |
Retrocopy | TITNTENTFITIQPHEGRGVLVEETTKCLEQKGFCLVSLKLMQASDT<LLQGHYSDVKDQQLFAHPVKCM |
Parental | HSGPVVAMVWEGLNVVKTGR |
HSGP.VAMVWE.LNVVKTGR | |
Retrocopy | HSGPWVAMVWEELNVVKTGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .24 RPM |
SRP017611_liver | 0 .00 RPM | 6 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004651 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000023628 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000016526 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000028492 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015559 | 5 retrocopies | |
Mus musculus | ENSMUSG00000091228 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007919 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022135 | 1 retrocopy |
retro_ocun_1728 ,
|
Oryctolagus cuniculus | ENSOCUG00000024946 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009415 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002693 | 3 retrocopies |