RetrogeneDB ID: | retro_ocun_173 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL019434:22528..23116(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000026461 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000011898 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKTSENGALPVVSVMREAESQLLPDVGSI |
MAPPVRYCIPGERL.NLEEGSPGSGTYT.HGYIFSSLAGCLTKTSENGALPVVSVMREAESQLLPDVGSI | |
Retrocopy | MAPPVRYCIPGERLRNLEEGSPGSGTYTQHGYIFSSLAGCLTKTSENGALPVVSVMREAESQLLPDVGSI |
Parental | VTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQ |
VTCKVSSINS.FAKVHILYVGSTPLKN.FRGTI.RKEDV.ATEKDKVEIYKSF.PGDIVLAKVISLGD.Q | |
Retrocopy | VTCKVSSINSCFAKVHILYVGSTPLKNFFRGTI-RKEDVPATEKDKVEIYKSFCPGDIVLAKVISLGDTQ |
Parental | SNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT |
SNYLLTT.ENELGVVVAHSES.VQ.VPISWCEMQCPKTHTKEFRKVA.VQPEFLQT | |
Retrocopy | SNYLLTTGENELGVVVAHSESTVQLVPISWCEMQCPKTHTKEFRKVACVQPEFLQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 9 .77 RPM |
SRP017611_kidney | 0 .10 RPM | 12 .16 RPM |
SRP017611_liver | 0 .00 RPM | 3 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006477 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007983 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005647 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000002246 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009228 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034321 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011898 | 1 retrocopy |
retro_ocun_173 ,
|
Otolemur garnettii | ENSOGAG00000016259 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003372 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048708 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006615 | 1 retrocopy |