RetrogeneDB ID: | retro_ocun_177 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:12240006..12240567(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023111 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000008021 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.59 % |
Parental protein coverage: | 97.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKKQNKKKVEEVLEEEEEEYVVEKVLD.RVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS | |
Retrocopy | MGKKQNKKKVEEVLEEEEEEYVVEKVLDHRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
Parental | QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEEVRLESEKPRGFARGLEPERIIGATDSSGELMFLM |
QKTAHETDKSEGGKRKADSDSE.KGEESKPKKKKEE....SEKPRGFARGLEPE.IIGAT.SSGEL.FLM | |
Retrocopy | QKTAHETDKSEGGKRKADSDSEGKGEESKPKKKKEE----SEKPRGFARGLEPEQIIGATGSSGELTFLM |
Parental | KWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKK |
KWKNSDEADLVPAKEANVKCPQVVISFYEERLTW.SYPSEDDDKK | |
Retrocopy | KWKNSDEADLVPAKEANVKCPQVVISFYEERLTWRSYPSEDDDKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .82 RPM | 23 .68 RPM |
SRP017611_kidney | 1 .93 RPM | 18 .35 RPM |
SRP017611_liver | 0 .31 RPM | 6 .32 RPM |