>retro_ocun_1791
AAAGGACAGGGGCAGGCACTTTGTGAAACTGAAAGGATGTATTTGTTTCTGAGTAAGAAGAAAGCAGATAAAATTAGAAA
TCTACAAAAACTGCTTTACAATAGACCAGACACAGTGTCCTCATTGAAGAAGAATGTGGGTCAGTTCAGAGGTTTTCCAC
TTGAAAATGGAAGTATTCAGTATAAAAAGAAGGAAGAAATGTTGAAAAAGTTTAGAAATGCCGTGTTAAAGAGCATCTGC
GTGGTTCTTGATTAGGAGAGGTCAGGTGTAAATAGTGAACGAGTGAAGAGGATCTTGAATTTCTTATTGAATCCAAAGCC
TTCTGGCAAACCATTGCCAAATTCTAGAAAGACTTCTAGCAAAGGCAGGAAGAAGGTGCGCAACAGCTCTGGAACAACAA
GGAAGGCGAAGCAAACCAAATATCCTGAAATTCTGTCAGATGAGTCTAGTAGTGATGATGAAAAGAAAAACAAGAGTCTT
CAGAGGATGAAGGTAAAGAAAGTGAAGAGGAGCCATCGAAAAAGACTTCTAATAGAGAAAAACCTAAACAGAAAGCTACT
GCAAAAGTAAAATGTCTGTAAAAAGTGCTAATGTTAAGAAAGCAGACAGCAGCACCGCCAAGAAGAATCAAGACAGTTCA
AGGAAGAAAGTGAATCTGAGGATAGTTCAGATGATGAACCTTTAAGTAAAAAAATTGAAGAAACCGCCTACAGAAGAAGA
GTTAAAGGAAACAGTAAAGAAATTATTGGCC
ORF - retro_ocun_1791 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.27 % |
Parental protein coverage: |
67.47 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | QGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTVSSLKKNVGQFSGFPFEKGSIQYKKKEEMLKK |
| .G.GQ.LCE.ER...FLSKKK.D..RNL.KLLYNRP.TVSSLKKNVGQF.GFP.E.GSIQYKKKEEMLKK |
Retrocopy | KGQGQALCETERMYLFLSKKKADKIRNLQKLLYNRPDTVSSLKKNVGQFRGFPLENGSIQYKKKEEMLKK |
|
Parental | FRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPKPSGKPLPKSKKTSSKGSKKERNSSGTTRKAKRTK |
| FRNA.LKSIC.VLD.ERSGVNSE.VKRILNFL..PKPSGKPLP.S.KTSSKG.KK.RNSSGTTRKAK.TK |
Retrocopy | FRNAVLKSICVVLD*ERSGVNSERVKRILNFLLNPKPSGKPLPNSRKTSSKGRKKVRNSSGTTRKAKQTK |
|
Parental | YPEILSDESSSDEDEKKNK-EESSEDEDKESEEEPPKKTSKREKPKQKAVA-KSKKSVKSANVKKADSST |
| YPEILSDESSSD.DEKKNK.E.S.EDE.KESEEEP.KKTS.REKPKQKA.A.KSK.SVKSANVKKADSST |
Retrocopy | YPEILSDESSSD-DEKKNK<ESS-EDEGKESEEEPSKKTSNREKPKQKATA<KSKMSVKSANVKKADSST |
|
Parental | TKKNQNSSKK-ESESEDSSDDEPL-IKKLKKPPTDEELKETVKKLLA |
| .KKNQ.SS.K.ESESEDSSDDEPL..KKLKKPPT.EELKETVKKLLA |
Retrocopy | AKKNQDSSRK<ESESEDSSDDEPL>VKKLKKPPTEEELKETVKKLLA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
89 .35 RPM |
SRP017611_kidney |
0 .00 RPM |
90 .71 RPM |
SRP017611_liver |
0 .00 RPM |
45 .86 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1791 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1791 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1791 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
8 retrocopies.