RetrogeneDB ID: | retro_ocun_1802 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018922:12494..12849(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHEBL1 | ||
Ensembl ID: | ENSOCUG00000016881 | ||
Aliases: | None | ||
Description: | Ras homolog enriched in brain like 1 [Source:HGNC Symbol;Acc:21166] |
Percent Identity: | 90.76 % |
Parental protein coverage: | 64.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EYSILPYSFIIGVHGYVLVYSITSLHSFQVVESLYQKLHEGHGKTRLPVVLVGNKADLSPD-REVQAVEG |
EYSILPYSFIIGVHGYVLVYSITSL.SFQV..SLYQKLHEGHGKTRLPVVLVGNKADLSPD.REV.AVEG | |
Retrocopy | EYSILPYSFIIGVHGYVLVYSITSLQSFQVLGSLYQKLHEGHGKTRLPVVLVGNKADLSPD>REVRAVEG |
Parental | KRLAESWGATFMESSARENQLAQSIFTRIIQEIARVENSYGPERRCLLM |
KRLAESW.ATFMESSARENQLA...FTRI.QEIARVENSYGPERRCL.M | |
Retrocopy | KRLAESWAATFMESSARENQLAECVFTRIMQEIARVENSYGPERRCLPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000002998 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000008514 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013173 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016881 | 1 retrocopy |
retro_ocun_1802 ,
|
Otolemur garnettii | ENSOGAG00000013477 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004897 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021571 | 1 retrocopy |