RetrogeneDB ID: | retro_ocun_183 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018781:71019..71436(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000014416 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000016739 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.83 % |
Parental protein coverage: | 63.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYAD |
RLQEDPPA.VSGAPSENNIMVWNAVI.GPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYAD | |
Retrocopy | RLQEDPPAAVSGAPSENNIMVWNAVILGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYAD |
Parental | GSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC |
GSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW.DC | |
Retrocopy | GSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWWDC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 38 .92 RPM |
SRP017611_liver | 0 .08 RPM | 9 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001079 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005098 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011908 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007060 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003026 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010209 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016739 | 1 retrocopy |
retro_ocun_183 ,
|
Otolemur garnettii | ENSOGAG00000024335 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005045 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012621 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000888 | 1 retrocopy |