RetrogeneDB ID: | retro_ocun_1899 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:70210003..70210390(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RSL24D1 | ||
Ensembl ID: | ENSOCUG00000007447 | ||
Aliases: | None | ||
Description: | ribosomal L24 domain containing 1 [Source:HGNC Symbol;Acc:18479] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 81.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VRNDCKVFRFCKSKCHKNFKK-KRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTI |
.R.D.KVFRFCKS.C.KNFKK.K.NP.KVRWTKAFRKAAGK.LTVDNSF.FEK.RNEPVKYQRELWNKT. | |
Retrocopy | LRSDGKVFRFCKSRCLKNFKK<KCNPLKVRWTKAFRKAAGKWLTVDNSFAFEK*RNEPVKYQRELWNKTT |
Parental | DAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLLRAPVAGKGKQLEE-KMVQQLQ |
DAMK..EEIKQK.Q.KF...R.KKNK....VQDI.EVKQNIHL..APVA.KGK.LEE.KMVQQLQ | |
Retrocopy | DAMKTAEEIKQKHQSKFVVKRWKKNK----VQDIREVKQNIHLIWAPVASKGK*LEE>KMVQQLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .89 RPM |
SRP017611_liver | 0 .00 RPM | 4 .55 RPM |