RetrogeneDB ID: | retro_ocun_1910 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:111287757..111288137(+) | ||
Located in intron of: | ENSOCUG00000000255 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C18orf21 | ||
Ensembl ID: | ENSOCUG00000028046 | ||
Aliases: | None | ||
Description: | chromosome 18 open reading frame 21 [Source:HGNC Symbol;Acc:28802] |
Percent Identity: | 64.12 % |
Parental protein coverage: | 60.47 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EAKILKKYRDSKSVLLVT-CKTCNRAVQHPGKSRSFLSALKSSPSTPLSKLSQEIAERRTPNAVNLTLSA |
E.K..K.Y.DSKS.LL...CKT.N.AV.H..KS.SFLSALKS.PSTP.SK..Q.I.ER......NL..S. | |
Retrocopy | EEKVVKIYKDSKSILLIA<CKTHNKAVRHCNKS-SFLSALKSNPSTPMSKVDQKIPERL*LQ*TNL--SG |
Parental | SRGKSPALTFRTPTSGQSTPICSPKNVSRTKKHLSQLKMLLSKSESQENPKMDFRNFLSSL |
S.G.SPA..F..PTSGQSTPIC.PKNVS.TKKH..QLKMLL.K.ES..NPK..F.NFLSSL | |
Retrocopy | SKG*SPAQIFKAPTSGQSTPICPPKNVSQTKKHFPQLKMLLGKNESKKNPKVYFINFLSSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .28 RPM |
SRP017611_liver | 0 .00 RPM | 4 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000029548 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021041 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000025449 | 1 retrocopy | |
Felis catus | ENSFCAG00000000626 | 1 retrocopy | |
Homo sapiens | ENSG00000141428 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026334 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018782 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025605 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024273 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006237 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000028046 | 2 retrocopies |
retro_ocun_1910 , retro_ocun_435,
|
Ochotona princeps | ENSOPRG00000011163 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009110 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009973 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009174 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000016670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010817 | 2 retrocopies |