RetrogeneDB ID: | retro_ocun_1931 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:59000369..59000874(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | M6PR | ||
Ensembl ID: | ENSOCUG00000017823 | ||
Aliases: | None | ||
Description: | mannose-6-phosphate receptor (cation dependent) [Source:HGNC Symbol;Acc:6752] |
Percent Identity: | 53.41 % |
Parental protein coverage: | 61.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LNETHIFNGSD-WIMLIYKGGDEYDRHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCF-YLFEL |
LN.THIFNGS..WI.L.YKGGDE...HC.KE.......I....H.L.DNFNP.SEER....DCF.YL.E. | |
Retrocopy | LNQTHIFNGSH>WILLFYKGGDECGNHCRKEKCCTKMIIF*YLHILIDNFNPMSEER---DDCF>YLSEM |
Parental | DSSLACPP-EVSHLSVGSVLLVTFASLVTVYIIGGFLYQRLVVGAKGMEQF-PHLAFWQDLGNLVADGCD |
D.SLA..P....H...G...L.TFAS.V..Y.I....YQ....GAK.MEQ....L.F.Q.LGN.V.DG.D | |
Retrocopy | DNSLAYSPRDLQHQ--GKLFLNTFASVVILYVIRRIFYQQPIMGAKIMEQL<SLLLF*QYLGNVVVDGSD |
Parental | FVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM |
FVCR.KP.N.P.AY..V.DD.L.EES....D.LLP. | |
Retrocopy | FVCRLKPQNTPVAYHSVVDDTLWEESK*KGDDLLPI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 46 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 94 .77 RPM |
SRP017611_liver | 0 .00 RPM | 40 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003538 | 1 retrocopy | |
Mus musculus | ENSMUSG00000007458 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017823 | 1 retrocopy |
retro_ocun_1931 ,
|
Otolemur garnettii | ENSOGAG00000005610 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005689 | 2 retrocopies |