>retro_ocun_201
TTCTGGCCGGCCCCACAGGCGCACATGGAATCATTCCGCTGGCTACAAGCTGCCCCCCGGCCGCCTGAGGAGCCTTACTC
GGTCTACATCTCAGCCCCCGGTGAGAAAAGGAGGACTGCCTATGTCGCCAAGCCCGGCTCGTCCGCAGTGCCTATAGGTG
CCAAGAGGCCCCTCGCGGCCAGCAGCAGCCTGCCCGTCCCAGTCCCCGAGCCTGGCAGCCGGCCACCCAAGGCGCGCACG
TGGTCGGGGATGGTGCCCAAGACCACCACCACGATCCCGTCCAAGCGGATCGCTTCCAGCCCCGCCTCCCAGGGTTTCAA
CAAACCCATCGTCTCCAAAGAGCGTGAGGGCAAAGTCCCCTCTGTGGTCCGCCAACGTTACCTCAGCTTGTTTATCGAGG
AATGTCTCAAGTTCTGCTCTTCCAATCAGGAGGCCACAGAGAAAGCGCTGAACGAGGAGAAGGTGGCCTACGACTGCAGC
CCCAGCAAAAGAATCTACGTGGACGTCGCCGCGAGCACCCTCCGGAGGCTCAGGGGCCTAGTGCCCAGCGCCGCGCCAAG
TCCCAACAGCGCCTCCCTGTACAGGCACCTCGGCCGCTACCTGCTCACCGAAGACCAGCTCAAGGAGAACGGCTACCCCT
TCCCGCACCCTGAACGGCCAGGGGGAGCCATCCTCTTCAAAGGCCAGGAGAAGCTGCCCAAAGACGCCTCCTGCAGAATC
TGCTGCCGCTGTGGCACCAAGTACCCGGTGTTGCCTTCGGGCCTCAGTGCTGGCGACCAGGAGTGTCGCTACCACTGGGG
GCGGCTTCGGCCGGCAGAGGCGGCTGGCGGCTGGGAGACCAGGTACATATGCTGCGCGGAGGCTTTGGGCTCTGCCGGCT
GCCGGGTCGCCAAGCGGCATGTCCAAGACGGCCGGAAGGAAAACCTCCAAGGGTTTGTGAAGACCCCGGAGAGGGCGCGG
TCTCACCCCGCCCAGCCTGGCGTCTACGCCCTTGACTGCGAAATGTCTTACACAACGCTGGGGCTGGAGCTGACGCGGGT
CACGGTGGTGGACCCCGAAATGCGAGTGGTGTACGACACCTTCGTCAAGCCCGATAACGAGATCGTGGACTATAACACCA
AGTTTTCCGGGGTGACCGAGGCCGACCTCGCCCACACCAACGTCACGCTGCGCGACGTCCAGGCCGTCCTGCTGAGCCTG
TTCAGCGCCGACACCATCCTCATCGGGCACAGCCTGGAGAGCGACCTGTTGACCCTGAAGGTCATCCACTGCACGGTGGT
GGACACATCTGTGCTCTTCCCCCATCACTTGGGCCTCCCGTTCAAGCGCTCGCTGCGGAATCTCATGGCCGACTACCTCC
ACAAGGTCATCCAGGATGACGTGCGTGGGCACAACTCCCAGGAGGACGCCAGTTCCTGCATGAGTCTGGTGTTGTGGAAG
ATCGAGGAAGACACCAAGGCCAGCGAC
ORF - retro_ocun_201 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
57.58 % |
Parental protein coverage: |
70.64 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | TLYRHLRNHLLTEEQLRENNYPRPNPDKPGCVLLNPCMTKTSVNDASKKICCRCGKIYDVTPSGKHSRVE |
| .LYRHL...LLTE.QL.EN.YP.P.P..PG...L.....K....DAS..ICCRCG..Y.V.PSG...... |
Retrocopy | SLYRHLGRYLLTEDQLKENGYPFPHPERPGGAILFKGQEKLP-KDASCRICCRCGTKYPVLPSGLSAGDQ |
|
Parental | ECYYHFGQVRSHKVLDGLESRYSCCGGVLGSPGCQESKLHVHD-QKENLEGFVKTSVKIPPADGNYGVFA |
| EC.YH.G..R......G.E.RY.CC...LGS.GC...K.HV.D..KENL.GFVKT...........GV.A |
Retrocopy | ECRYHWGRLRPAEAAGGWETRYICCAEALGSAGCRVAKRHVQDGRKENLQGFVKTPERARSHPAQPGVYA |
|
Parental | VNCEMCYTVKGLELTRVTVVDSSFQMVCDTFVKPDEEIIDYNTRFSGVVEDDLKNIRTSIRDVQAILLNL |
| ..CEM.YT..GLELTRVTVVD.....V.DTFVKPD.EI.DYNT.FSGV.E.DL.......RDVQA.LL.L |
Retrocopy | LDCEMSYTTLGLELTRVTVVDPEMRVVYDTFVKPDNEIVDYNTKFSGVTEADLAHTNVTLRDVQAVLLSL |
|
Parental | FSADTILIGHSFEQCLYALKLIHTCVVDTTVMFPHRLGLPHKRSLGSLVADYLQRIIQDDVFEGHNTSEK |
| FSADTILIGHS.E..L..LK.IH..VVDT.V.FPH.LGLP.KRSL..L.ADYL...IQDDV..GHN..E. |
Retrocopy | FSADTILIGHSLESDLLTLKVIHCTVVDTSVLFPHHLGLPFKRSLRNLMADYLHKVIQDDV-RGHNSQED |
|
Parental | AKACMELVLWKVKEDLK |
| A..CM.LVLWK..ED.K |
Retrocopy | ASSCMSLVLWKIEEDTK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .50 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .51 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_201 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_201 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_201 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
3 retrocopies.