RetrogeneDB ID: | retro_ocun_324 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:174286119..174286390(+) | ||
Located in intron of: | ENSOCUG00000008004 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023625 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000025604 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.1 % |
Parental protein coverage: | 71.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PDKDCRYALYDATYETKESKKEDLVFI-FWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVK |
PDKDC.YALYDA....KESKKEDLVFI.FWAP..APL.SKMIYASSKDAIKKKL..IKHELQANCYEEVK | |
Retrocopy | PDKDCCYALYDANLQDKESKKEDLVFI<FWAPKSAPLESKMIYASSKDAIKKKLRRIKHELQANCYEEVK |
Parental | DRCTLAEKLG-GSAVISLEGKPL |
DRCTLAEKLG.GSAVISLEGKPL | |
Retrocopy | DRCTLAEKLG<GSAVISLEGKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .77 RPM | 268 .33 RPM |
SRP017611_kidney | 0 .71 RPM | 109 .57 RPM |
SRP017611_liver | 0 .23 RPM | 51 .33 RPM |