RetrogeneDB ID: | retro_ocun_33 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018921:376971..377223(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000014190 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000029216 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.75 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGFFQLLMKKKELIPLVAIMTFAASGASAFALYSFKKTDVIVDRKRNPEPWETVDPNVPQKLVTINQQWK |
MGFFQLLMKKKELIPLVAIMTFAAS.AS.FALYSF.K..VIVDR.RN.EPW.TV.PNVPQKLVTINQQWK | |
Retrocopy | MGFFQLLMKKKELIPLVAIMTFAASRASTFALYSFQKINVIVDRQRNLEPWDTVNPNVPQKLVTINQQWK |
Parental | PIEELQKVRKATK |
PIE.LQKVRKAT. | |
Retrocopy | PIEVLQKVRKATR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .20 RPM |
SRP017611_liver | 0 .00 RPM | 0 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000031501 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000020706 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003556 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013137 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000028279 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029216 | 1 retrocopy |
retro_ocun_33 ,
|
Rattus norvegicus | ENSRNOG00000050251 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006433 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000021929 | 1 retrocopy |