>retro_ocun_365
CCTAGGCCTGGCTCAGGAGCCCCTGGAAGCCAGGAGGAAGAGGAGCCATGACTGGGTGATGGTGACCTGGGGGACAGTGC
CATTGAGGACCAGGAGCCAGAAGTGCTCAAAGCCGGAATCAGAGGGATGGAGGAGGAAGTTGAGAAACTGAAGGAGCTAC
AGAACAAGGTAGAGGAGCAGATGAATATGAGTCCCCTGGCAGGCAGCGCTGGCCCAGTGATCACGTCTGCTGAGGAGAAG
TTGGAGGCTGGCGCCTGTTACGTCTATGCTACCAATATGGACGGGGTTGCAACAGAAGAGCTAGAAGCTCGCTTTGATGG
CTGTGATTCAGTCAACCAGGTAACTATAATTGTGACAAGTTCAGTGGCCATCCCAAAGGGTTTGCATATACAGAGTTCTC
AGACACAGACAGTGAGGACTTCCCTGGCCTTACACGAGTCCCTATTTAGTGGAAGACAAATCAAGGTGATTCCAAAATGA
ACCAACAGACCAGGCATCATGATACACAACAGACAGGGGTTTCCTGTGTGCCCGCTCCCAGGCCAGGACCACCAAC
ORF - retro_ocun_365 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
67.02 % |
Parental protein coverage: |
62.33 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | PGPGSGAPGNQEEEEEPGLVEGDPGDSAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGN |
| P.PGSGAPG.QEEEE.P.L..GD.GDSAIED.E.E..KA..R.MEEE.EKLKELQN.VE.QMNMSP..G. |
Retrocopy | PRPGSGAPGSQEEEE-P*LGDGDLGDSAIEDQEPEVLKAGIRGMEEEVEKLKELQNKVEEQMNMSPLAGS |
|
Parental | AGPVIMSIEERMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTIL-CDKFSGHP-KGFAYIEFSDK |
| AGPVI.S.EE..EA.A...Y..N.D.G...EELEA.F.GC.SVN.VTI..CDKFSGHP.KG...I..S.. |
Retrocopy | AGPVITSAEEKLEAGACYVYATNMD-GVATEELEARFDGCDSVNQVTII<CDKFSGHP>KGL-HIQSSQT |
|
Parental | ESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDR-GFP-RARYRARTTN |
| ..VRTSLAL.ESLF.GRQIKVIPK.TNRPGI....R.GFP..AR..ARTTN |
Retrocopy | QTVRTSLALHESLFSGRQIKVIPK*TNRPGIMIHNRQGFP>CARSQARTTN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .06 RPM |
94 .37 RPM |
SRP017611_kidney |
0 .00 RPM |
57 .77 RPM |
SRP017611_liver |
0 .00 RPM |
42 .70 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_365 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_365 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_365 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
6 retrocopies.