RetrogeneDB ID: | retro_ocun_383 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:105952669..105953146(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATF1 | ||
Ensembl ID: | ENSOCUG00000017023 | ||
Aliases: | None | ||
Description: | activating transcription factor 1 [Source:HGNC Symbol;Acc:783] |
Percent Identity: | 86.79 % |
Parental protein coverage: | 58.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NGALQLASPGADGVQGLQTLPMTNSGSTQQGTILQYAQTSDGQQILVPSNQVVVQT-SGDMQTYQIRTTP |
.GALQLASPGADGVQGLQTLPMTNSGSTQQGTILQ.AQTS.GQQILVPSNQVVVQT.SGDMQTYQIRTTP | |
Retrocopy | DGALQLASPGADGVQGLQTLPMTNSGSTQQGTILQ*AQTSEGQQILVPSNQVVVQTASGDMQTYQIRTTP |
Parental | SATSLPQAVVMTSPVTLTSQTTKT---DDPQLKREIRLMKNREAARECRRKKKEYVKCLENRVAVLENQN |
SATSLPQ.............TTKT...DDPQLKREIRL.KNREAARECRRKKKEYVKCLENRVAVLENQN | |
Retrocopy | SATSLPQXXXXXXXXXXXXXTTKTDD*DDPQLKREIRLTKNREAARECRRKKKEYVKCLENRVAVLENQN |
Parental | KTLIEELKTLKDLYSHKSV |
KTLIEELKTLKDLYSHKSV | |
Retrocopy | KTLIEELKTLKDLYSHKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .71 RPM | 12 .91 RPM |
SRP017611_kidney | 2 .33 RPM | 21 .39 RPM |
SRP017611_liver | 1 .39 RPM | 14 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004733 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008000 | 2 retrocopies | |
Homo sapiens | ENSG00000123268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023027 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017023 | 1 retrocopy |
retro_ocun_383 ,
|
Otolemur garnettii | ENSOGAG00000026029 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010038 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004637 | 2 retrocopies |