RetrogeneDB ID: | retro_ocun_388 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:125207548..125207865(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMMP1L | ||
Ensembl ID: | ENSOCUG00000029612 | ||
Aliases: | None | ||
Description: | IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26317] |
Percent Identity: | 74.77 % |
Parental protein coverage: | 62.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VFMCFGPSMEPTIQNSDIVFAENLSRHFYGIHRGDIVIVKSPSDPSSNICKRVIGLEGDKILTTSPSDFF |
V.M..G.S..PTIQNSD.VFAENLS.HFY.IHRGDIVI....SDP.S.ICKRV.GLEGDKILTTS.S..F | |
Retrocopy | VGMYSGLSVQPTIQNSDTVFAENLSQHFYDIHRGDIVIANNLSDPKSSICKRVTGLEGDKILTTSSSNSF |
Parental | K-SHSYVPTGHVWLEGDNLQRSTDSRYYGPIPYGLIR |
K.S.SYVPTGHVWL..DNL..S.DSRYY.PIPYGLIR | |
Retrocopy | K<SCSYVPTGHVWLGSDNLPNSVDSRYYEPIPYGLIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .06 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .51 RPM |
SRP017611_liver | 0 .00 RPM | 2 .85 RPM |