RetrogeneDB ID: | retro_ocun_390 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:134352297..134352763(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A3 | ||
Ensembl ID: | ENSOCUG00000011847 | ||
Aliases: | None | ||
Description: | solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 [Source:HGNC Symbol;Acc:10989] |
Percent Identity: | 73.58 % |
Parental protein coverage: | 50.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSE |
K..IQ.QPGYANTLRDA.PKMYKEE.LKAFYK..APLWMR..PY.MMK..CF...VEALYKFVV...R.E | |
Retrocopy | KIQIQIQPGYANTLRDATPKMYKEECLKAFYKSIAPLWMRKVPYAMMKVVCFG-AVEALYKFVVL*SRRE |
Parental | CSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASQVLQRLGFK-GVWKGLFARIIMIGTL |
C.K.E.LVV.F..GYIAG.FCAIVSHPADSVVSVLNKEK..S.S.VLQRLGFK.GV..GLFA.IIM.GTL | |
Retrocopy | CTKTEKLVVIFATGYIAGIFCAIVSHPADSVVSVLNKEKSGSTSEVLQRLGFK<GV*EGLFACIIMTGTL |
Parental | TALQW-FIYDSVKVYFRLP |
T.LQ....Y.SVKVY.RLP | |
Retrocopy | TVLQL<VVYHSVKVYYRLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 444 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 608 .14 RPM |
SRP017611_liver | 0 .00 RPM | 139 .04 RPM |