>retro_ocun_405
GGTCGGAAGGCCAAGGACATTATAAACGCAGCGCGGGAAAACGTGGCGAAGATGATAGGTGCGAAACCTCGAGACATAGT
CTTCACCTCCGGGGGGACTGAGTCAAACAACTTAGTGATCCATTCTGCGATGAAAACCTTCCACGAAAACGAAGCCTCCG
GAGGGGGCGCGGTGGAGCACCCCAGCCCGGTAGAGGGGGCCACGCCCCACTTCGTAACGAGCACAGTGGAGCACGACTCC
ATCTCTCTGCCCCTGCAGCACCTGGCAAAGGAGCAAGTGGCCGCAGTCACCTTTGTCCCAGTGTCCAAGGTGAGCGGGCA
GGTGGAGGTAGACGACGTCCTGGCCGCAGTCCGTCCCACCACGTGCCTGGTGACCATCATGCTGGCCAATAACGAGACTG
GCATCATCATGCCTGTCCCCGAAATCAGCCAGCGCATCGCAGCCCTGAACCAGAAGCGGGCAGCGTCCGGGCTGCCCCGC
GTCCTGCGGCACACGGACGCCGCGCAGGCGTTGGGGAAGAGGCGCGTGGATGTGGAGGACCTGGGTGTGGACTTCCTGAC
CATCGTGGGGCACAAGTTCTACGGCCCCAGGATTGGCGCGCTTTATGTTCGAGGGCTCGGTGAACTCACCCCTCTGTACC
CCATGCTGTTTGGAGGTGGACAAGAGCGGAATTTCAGGCCAGGGACGGAGAACACCCCGATGATTGCCGGCCTTGGGAAG
GCTGCTGAGCTGGTGACCGCGAACTGTGAGGCTTACGAGGCCCACATGAGAGACGTCTGAGACTACCTGGAGGAGAGGCT
GGAGGCTGAGTTTGGTAAAAAGAGAATCCATCTCAATAACCGGTTTCCAGGGGCCGAGCGGCTGCCAAACACCTGTAACG
TTTCCATCCGGGGACCCCAGCTTCCAGGCCGCCTGGTGCTCGCACAGTGCCGGACGCTGCTGGCCAGCGTAGAGGCCACA
TGCCACTCGGACCTCGGGGACCAGCCGTCGCCCGTGCTGCTGAGCTGCGGCGTCCCCTTCGCGGTGGCCAAGAACGCGCT
GTGCCTCAGCGTGGGCCGCAGCACCACCAGGGCAGAGGTGGAGCTCGCCGTGCAGGACCTGAAGCAGGCCGTTGGCCCGG
CTGGAGGGCCAGGCC
ORF - retro_ocun_405 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.1 % |
Parental protein coverage: |
91.75 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | GRKAKDIINAARENVAKMIGANPRDIVFTSGGTESNNLVIHSAMKTFHENKASGGGALEHPSPVEGATPH |
| GRKAKDIINAARENVAKMIGA.PRDIVFTSGGTESNNLVIHSAMKTFHEN.ASGGGA.EHPSPVEGATPH |
Retrocopy | GRKAKDIINAARENVAKMIGAKPRDIVFTSGGTESNNLVIHSAMKTFHENEASGGGAVEHPSPVEGATPH |
|
Parental | FVTSTVEHDSISLPLQHLAKEQVAAVTFVPVSKVSGQVEVDDVLAAVRPTTCLVTIMLANNETGIIMPVP |
| FVTSTVEHDSISLPLQHLAKEQVAAVTFVPVSKVSGQVEVDDVLAAVRPTTCLVTIMLANNETGIIMPVP |
Retrocopy | FVTSTVEHDSISLPLQHLAKEQVAAVTFVPVSKVSGQVEVDDVLAAVRPTTCLVTIMLANNETGIIMPVP |
|
Parental | EISQRIAALNQKRAVSGLPRVLLHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPRIGALYVRGLGDLT |
| EISQRIAALNQKRA.SGLPRVL.HTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPRIGALYVRGLG.LT |
Retrocopy | EISQRIAALNQKRAASGLPRVLRHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPRIGALYVRGLGELT |
|
Parental | PLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTANCEAYEAHMRDVRDYLEERLEAEFGKKRIHLNN |
| PLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTANCEAYEAHMRDV.DYLEERLEAEFGKKRIHLNN |
Retrocopy | PLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTANCEAYEAHMRDV*DYLEERLEAEFGKKRIHLNN |
|
Parental | RFPGAERLPNTCNVSIRGPQLPGRLVLAQCRTLLASVGAACHSDLGDQPSPVLLSCGVPFAVAKNALRLS |
| RFPGAERLPNTCNVSIRGPQLPGRLVLAQCRTLLASV.A.CHSDLGDQPSPVLLSCGVPFAVAKNAL.LS |
Retrocopy | RFPGAERLPNTCNVSIRGPQLPGRLVLAQCRTLLASVEATCHSDLGDQPSPVLLSCGVPFAVAKNALCLS |
|
Parental | VGRSTTRAEVELAVQDLKQAV-ARLEGQA |
| VGRSTTRAEVELAVQDLKQAV.ARLEGQA |
Retrocopy | VGRSTTRAEVELAVQDLKQAV>ARLEGQA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
1 .49 RPM |
36 .76 RPM |
SRP017611_kidney |
1 .82 RPM |
45 .00 RPM |
SRP017611_liver |
0 .69 RPM |
52 .26 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_405 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_405 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_405 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.