RetrogeneDB ID: | retro_ocun_42 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 20:11583419..11583734(-) | ||
Located in intron of: | ENSOCUG00000005045 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025110 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000004636 | ||
Aliases: | None | ||
Description: | Enhancer of rudimentary homolog [Source:UniProtKB/TrEMBL;Acc:G1SM70] |
Percent Identity: | 100. % |
Parental protein coverage: | 99.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLV |
SHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLV | |
Retrocopy | SHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLV |
Parental | YRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK |
YRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK | |
Retrocopy | YRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .44 RPM | 3 .86 RPM |
SRP017611_kidney | 1 .42 RPM | 2 .74 RPM |
SRP017611_liver | 0 .08 RPM | 0 .54 RPM |