>retro_ocun_44
TTTGGACTGAGCAACAAATTTGAATCAGAATTCCCTTCTTCATTAACTGGAAAAGTAGCTCCTGAAGAATTCAAAGCCAG
CATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTCAATGTGCGCTGGCTCCTCTGCGGCTGCCTTTACTGCT
GCTGCACGCTGGGTTGCAGCATGTGGCCAGTTATCTGCCTCAGTAAGAGAACACGAAGATTGATTGAGAAGTTATTAGAA
TGGGAAAACAATAGGTTATACCACAAGCTGTGCTTGCACTGGAGACTGAGCCAAAGGAAATATGAAACGAGTAACATGAT
GGAATATGTCATCCTCATAGAATTTTTACCAAAGACAACGATTTTTCGACCAGAT
ORF - retro_ocun_44 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.8 % |
Parental protein coverage: |
56.31 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | FGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNSCLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKR |
| FGLSNKF..EFPS.LTGKVAPEEFK.SI.RVNSCLKK.LPVNV.WLLCGCL.CCCTLGCS.WPVICL.KR |
Retrocopy | FGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGCLYCCCTLGCSMWPVICLSKR |
|
Parental | TRRSIQKLLEWENNRLYHKLALHWKLTKRKCETSNMMEYVILIEFLPKYPIFRPD |
| TRR.I.KLLEWENNRLYHKL.LHW.L..RK.ETSNMMEYVILIEFLPK..IFRPD |
Retrocopy | TRRLIEKLLEWENNRLYHKLCLHWRLSQRKYETSNMMEYVILIEFLPKTTIFRPD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .99 RPM |
2 .04 RPM |
SRP017611_kidney |
1 .11 RPM |
1 .52 RPM |
SRP017611_liver |
0 .39 RPM |
0 .69 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_44 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_44 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_44 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.