RetrogeneDB ID: | retro_ocun_445 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:26387124..26387473(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000001832 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.02 % |
Parental protein coverage: | 50.21 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LDNLMEKRKEKL-DSVIEFSIPDSLLIRRITGRLIHPTSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDN |
L..LMEKR...L..SV.EFSIPDSLL..RIT.RLIHPTSG.SY.EEFN....P.K....G.P....SDDN | |
Retrocopy | LNDLMEKRDRTL<ESVTEFSIPDSLLTPRITERLIHPTSGHSYQEEFNSHGNP*KITSLGHPDL*-SDDN |
Parental | EKALKIRL-EAYHTQTTPLVEYYRKRGIHAAVDASQTPDVVFACILAAFSKA |
EKALKI....A.HT.TT.L.E..RK.........SQTPDV...C.LAAFSKA | |
Retrocopy | EKALKIHQ<DACHT*TT-LLE*HRKQDL-LCHSVSQTPDVISVCVLAAFSKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 68 .31 RPM |
SRP017611_liver | 0 .00 RPM | 92 .88 RPM |