RetrogeneDB ID: | retro_ocun_526 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:108820036..108820387(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL24 | ||
Ensembl ID: | ENSOCUG00000000791 | ||
Aliases: | None | ||
Description: | ribosomal protein L24 [Source:HGNC Symbol;Acc:10325] |
Percent Identity: | 59.5 % |
Parental protein coverage: | 74.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | FLSKRNPRQ-INWTVLYRRKHKKGQSEEIQKK-RTRRAVKFQR-AITGASLADIMAKRNQKPEVRKAQRE |
FLSKRNP.Q.INW.VL.RR.HKKGQ.E...K..R....VKFQR...T.A.L.DI..K.NQK..VR.AQ.E | |
Retrocopy | FLSKRNPQQ<INWIVLFRRQHKKGQLEKKLKR>RNNYTVKFQR>IDTDACLTDIVVKTNQKAKVREAQCE |
Parental | QAIRAA-KEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGK |
QA.....K..KKAK...KKTAMA.A.APTKA.PKQKIVK..K.S.P....K | |
Retrocopy | QASKET<KQTKKAKKTVKKTAMAVAEAPTKAEPKQKIVKLMKISTPSIDRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 45 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 161 .06 RPM |
SRP017611_liver | 0 .00 RPM | 17 .03 RPM |