RetrogeneDB ID: | retro_ocun_553 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:26431826..26432204(-) | ||
Located in intron of: | ENSOCUG00000016154 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP1 | ||
Ensembl ID: | ENSOCUG00000022505 | ||
Aliases: | None | ||
Description: | S-phase kinase-associated protein 1 [Source:HGNC Symbol;Acc:10899] |
Percent Identity: | 63.64 % |
Parental protein coverage: | 79.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MPSIKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDD-DPVPLP-NVNAAILKKVIQWCTHHKD |
MPSIKLQSSDGEIFEVDVE..AK.SVTI..ML..LG.DDE..D..PVP.P..V.AAI.K.V......H.. | |
Retrocopy | MPSIKLQSSDGEIFEVDVEM<AKPSVTIRIMLDGLGTDDEEGD<PPVPPP<SVRAAIVKQVVR--SAHPR |
Parental | DPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG |
D.PPPED.ENKE.R.D..P.W..EFL..DQG.L.EL.LAAN.LD..GLLDV..K..ANM.KG | |
Retrocopy | DGPPPEDHENKENRADAVPGWNREFLETDQGKLCELMLAANNLDSQGLLDVRRKIGANMCKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 217 .39 RPM |
SRP017611_kidney | 0 .10 RPM | 136 .83 RPM |
SRP017611_liver | 0 .08 RPM | 40 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017810 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000994 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000013613 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012999 | 9 retrocopies | |
Echinops telfairi | ENSETEG00000007560 | 5 retrocopies | |
Felis catus | ENSFCAG00000031140 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022930 | 7 retrocopies | |
Microcebus murinus | ENSMICG00000017588 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000022919 | 13 retrocopies | |
Monodelphis domestica | ENSMODG00000014168 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022505 | 10 retrocopies |
retro_ocun_1119, retro_ocun_1228, retro_ocun_1242, retro_ocun_1420, retro_ocun_1453, retro_ocun_1572, retro_ocun_1784, retro_ocun_397, retro_ocun_448, retro_ocun_553 ,
|
Pongo abelii | ENSPPYG00000015783 | 7 retrocopies | |
Vicugna pacos | ENSVPAG00000001583 | 1 retrocopy |