RetrogeneDB ID: | retro_ocun_573 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:100227807..100228220(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCNP | ||
Ensembl ID: | ENSOCUG00000011110 | ||
Aliases: | None | ||
Description: | PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023] |
Percent Identity: | 61.54 % |
Parental protein coverage: | 75.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SSSNGGESSSRSAEKRSAEEEAADLPTKPTKISKFGFAIGSQTSKKASAISIKLGSSKPKETVPTLAPKT |
SSS...E..S................TKPTK.SK.GFA.GS.TSK.A.A.SIKLG.SKP...VPT.APKT | |
Retrocopy | SSSRSAEK*SAKEAATDTPRHTHTHITKPTKVSKLGFATGS*TSKQAAARSIKLGASKP---VPTRAPKT |
Parental | LSVAAA-FNEDEDSEPEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHD |
LSVA.A.FN.D.D..PEEMPPEAK......GRDTPT.A.P..F..GKHG.SDNQKLWE.N.KSHLGN.HD | |
Retrocopy | LSVAGA<FNGDDDGKPEEMPPEAKTKLRT-GRDTPTPAQPDPFSEGKHGISDNQKLWE*NSKSHLGNSHD |
Parental | QDN |
QDN | |
Retrocopy | QDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .51 RPM |
SRP017611_liver | 0 .00 RPM | 7 .01 RPM |