RetrogeneDB ID: | retro_ocun_579 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:106453961..106454576(-) | ||
Located in intron of: | ENSOCUG00000003157 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSOCUG00000007209 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 71.01 % |
Parental protein coverage: | 76.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDMVVGEGTHFLIPWVQKPIIFDCR |
MAAKVFESIGK.GLA..VA..V.N.A..NVDAGHRAVI.D.F.GVQDMVVG....F..P.V...I...CR | |
Retrocopy | MAAKVFESIGKSGLAISVAEDVGNFASWNVDAGHRAVISDQFCGVQDMVVGRRNSFPHP-VGAEINYLCR |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI |
S.P.NV...TGSK.LQNV..TLR.LF..VASQLP..F.S..E.YD..VL.SIT.E.LKS..A.FDAG.LI | |
Retrocopy | SCPWNVWATTGSKQLQNVDFTLRSLFWQVASQLPTVFSSSRERYDKLVLLSITLELLKSAMAHFDAGKLI |
Parental | TQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQK |
TQRE.VSRQV.DDLTER.ATFGLILD.VSLTHLTFG.EFTEAVEAK.VA.QEAERARFVV.KAEQ.K | |
Retrocopy | TQRERVSRQVRDDLTERVATFGLILDGVSLTHLTFGREFTEAVEAKPVAWQEAERARFVV-KAEQHK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 116 .86 RPM |
SRP017611_liver | 0 .00 RPM | 30 .83 RPM |