RetrogeneDB ID: | retro_ocun_587 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:135586094..135586357(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSOCUG00000000179 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 59.55 % |
Parental protein coverage: | 67.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVRMNVLADAL-KSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRL |
MV.M.VLA.AL.K..NN..K..K.Q.LI..C.KV...FLTVM.KHGY.G.FE...DH.AGKIVVNLTGRL | |
Retrocopy | MVLMKVLANAL<KHMNNGKKGDKVQELIWLCPKVNIGFLTVMVKHGYTGRFEVTHDHGAGKIVVNLTGRL |
Parental | NKCGVISPRFDVQLKDLEK |
N.CGV....F.V....L.K | |
Retrocopy | NSCGVTNS*FNVRVQELQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 93 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 242 .24 RPM |
SRP017611_liver | 0 .00 RPM | 47 .71 RPM |