RetrogeneDB ID: | retro_ocun_628 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:128373902..128374262(+) | ||
Located in intron of: | ENSOCUG00000017751 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000000958 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase [ubiquinone] 1 subunit C2 [Source:UniProtKB/TrEMBL;Acc:G1SEF1] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MMSGRPGREPLKFLPDEARSLPPPKLTDPRLLYFGFMGYCSGLLDNALRRRPVTMAGLHRQLLYVTSFVF |
MMSGRPGREPLKFLPDEARSLPPPKLTDPRLLYFGFMGYCSGLLDNALRRRPVTMAGLHRQLLYVTSFVF | |
Retrocopy | MMSGRPGREPLKFLPDEARSLPPPKLTDPRLLYFGFMGYCSGLLDNALRRRPVTMAGLHRQLLYVTSFVF |
Parental | AGYYLLKRQDYMYAVRDHDMFGYMNSHPEDFPEKDKKTYGEILEEFHPVH |
AGYYLLKRQDYMYAVRDHDMFGYMNSHPEDFPEKDKKTYGEILEEFHPVH | |
Retrocopy | AGYYLLKRQDYMYAVRDHDMFGYMNSHPEDFPEKDKKTYGEILEEFHPVH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 14 .46 RPM |
SRP017611_kidney | 0 .51 RPM | 29 .29 RPM |
SRP017611_liver | 0 .15 RPM | 8 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000029444 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030647 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000958 | 1 retrocopy |
retro_ocun_628 ,
|
Tursiops truncatus | ENSTTRG00000007154 | 1 retrocopy |