RetrogeneDB ID: | retro_ocun_63 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:37779853..37780630(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000009671 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000011880 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVT |
MKTPF....G..........G............KK.......S...SQPRRNIVGCRIQHGWK.G..P.T | |
Retrocopy | MKTPF----GKATAGQRSRTGAEHASVSVTVMKKKVAQKKQRSRLTSQPRRNIVGCRIQHGWKDGDEPLT |
Parental | QWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHM |
QWKGTVLDQVPVNPSLYLIKYDGFDCVYGLEL..DERVS.LEVLP.RVA.SRISD.HLA..MIGKAVEH. | |
Retrocopy | QWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELHRDERVSSLEVLPNRVASSRISDTHLAEIMIGKAVEHI |
Parental | FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVV |
FETE.GS..EWRGMVLA.APVM..WFYITYEKDPVLYMYQLLDDYK.GDLR...DS.DSPPAEREPGEVV | |
Retrocopy | FETEEGSRNEWRGMVLAQAPVMSSWFYITYEKDPVLYMYQLLDDYKDGDLRVLQDSSDSPPAEREPGEVV |
Parental | DSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS |
DSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS | |
Retrocopy | DSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .76 RPM | 72 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .91 RPM |
SRP017611_liver | 0 .00 RPM | 15 .03 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_1841 |