RetrogeneDB ID: | retro_ocun_634 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:15252373..15252638(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSOCUG00000000179 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 55.32 % |
Parental protein coverage: | 70. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNK-CGVISPRFDVQLKD-LEKWQNNLLPSR-QFGFIVLTT |
.M...G.IG.FE.ID.H......VN.T.R.N..CGV.S.R...QLKD.L...QN.LLP...QFGFI.LT. | |
Retrocopy | LMVEQGGIGKFEVIDSHSTEE-AVNTTSRINRECGVVSSRSVIQLKD<LRQRQNSLLPFP<QFGFILLT- |
Parental | SAGIMDHEEARRKHTGGKILGFFF |
.AGI.DHE..R.KHTGG.IL.F.F | |
Retrocopy | -AGIADHEGERQKHTGGEILAFLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 93 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 242 .24 RPM |
SRP017611_liver | 0 .00 RPM | 47 .71 RPM |