RetrogeneDB ID: | retro_ocun_646 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:44317381..44317975(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000004526 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAE1 | ||
Ensembl ID: | ENSOCUG00000001585 | ||
Aliases: | None | ||
Description: | RAE1 RNA export 1 homolog (S. pombe) [Source:HGNC Symbol;Acc:9828] |
Percent Identity: | 94.55 % |
Parental protein coverage: | 54.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TSGFGTSGTSMFGSTTTDNHNPMKDIEVTSSPDDSVGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ |
.SGFGTSGTSMFGSTTTDNHNPMKDIEVTSSPDDSVGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG. | |
Retrocopy | SSGFGTSGTSMFGSTTTDNHNPMKDIEVTSSPDDSVGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGK |
Parental | TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMT |
.IPKAQQMHTGPVLDVCWSDD.SKVFTASCDKTAKMWDLNSNQAIQIA....PVKTIHWIKAPNYSCVMT | |
Retrocopy | NIPKAQQMHTGPVLDVCWSDDRSKVFTASCDKTAKMWDLNSNQAIQIA----PVKTIHWIKAPNYSCVMT |
Parental | GSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIE |
GSWDKTLKFWDTRSSNP.MV.QLP.RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIE | |
Retrocopy | GSWDKTLKFWDTRSSNPRMVPQLPKRCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 22 .79 RPM |
SRP017611_kidney | 0 .20 RPM | 16 .83 RPM |
SRP017611_liver | 0 .08 RPM | 8 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryctolagus cuniculus | ENSOCUG00000001585 | 2 retrocopies |
retro_ocun_1819, retro_ocun_646 ,
|
Otolemur garnettii | ENSOGAG00000014649 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000000228 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000000550 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002438 | 1 retrocopy |