RetrogeneDB ID: | retro_ocun_708 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:84877597..84878488(+) | ||
Located in intron of: | ENSOCUG00000015959 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A5 | ||
Ensembl ID: | ENSOCUG00000013268 | ||
Aliases: | None | ||
Description: | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 [Source:HGNC Symbol;Acc:10991] |
Percent Identity: | 96.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVRIPKEQGVLSF |
MTDA.VSFAKDFLAG.VAAAISKTAVAPIERVKLLLQVQHASKQIT..KQYKGIIDCVV.IPKEQGVLS. | |
Retrocopy | MTDASVSFAKDFLAGAVAAAISKTAVAPIERVKLLLQVQHASKQITDNKQYKGIIDCVVHIPKEQGVLS- |
Parental | WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR |
WRGNLANVIRYFPTQALNFAFKDKYK.IFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFA.TR | |
Retrocopy | WRGNLANVIRYFPTQALNFAFKDKYKLIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFAHTR |
Parental | LAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHI |
LAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHI | |
Retrocopy | LAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHI |
Parental | FISWMIAQSVTAVAGLTSYPFDTVRRRMMMQSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLR |
FISWMIAQSVTAVAGLTSYPFDTVRR.MM.QSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLR | |
Retrocopy | FISWMIAQSVTAVAGLTSYPFDTVRRCMMIQSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLR |
Parental | GMGGAFVLVLYDEIKKFT |
GMG.AFVLVLYDEIKKFT | |
Retrocopy | GMGSAFVLVLYDEIKKFT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 40 .62 RPM |
SRP017611_kidney | 0 .30 RPM | 231 .19 RPM |
SRP017611_liver | 0 .00 RPM | 8 .63 RPM |