RetrogeneDB ID: | retro_ocun_735 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:6446124..6446413(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000028154 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.48 % |
Parental protein coverage: | 71.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VPANFEDPVNLLVEDEEVEQIFGQDDKYLRCIEEHSNTL-IQLDRYYVACSYTRIIITRPVRAQRWLMYM |
VP....D.V..LV..E...Q.FG.DD..L.CIE.HS.TL..QLDRYYVA.SYT...I.RP..AQ..L.Y. | |
Retrocopy | VPEILDDAVRILVV-EDMKQVFGEDDEHLQCIEVHSKTL>SQLDRYYVASSYTCMVIARPAKAQW*LLYI |
Parental | MSCLRIDHPDLQAEGLQMLQHVRSEPLTKED |
..CLRI..PDL...GL.....V.S..LTK.D | |
Retrocopy | KECLRISDPDLHTKGL---EPVYSQLLTKDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000009236 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000006451 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018573 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067750 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000028154 | 1 retrocopy |
retro_ocun_735 ,
|
Otolemur garnettii | ENSOGAG00000006102 | 1 retrocopy |