RetrogeneDB ID: | retro_ocun_749 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:51520579..51520829(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MPHOSPH6 | ||
Ensembl ID: | ENSOCUG00000024341 | ||
Aliases: | None | ||
Description: | M-phase phosphoprotein 6 [Source:HGNC Symbol;Acc:7214] |
Percent Identity: | 57.95 % |
Parental protein coverage: | 54.04 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SKNLLRMKFMQRGLDSETKKQLEEEEKKIISEEHWYLDLPELKEKESLIIEEQSFLLCEDLLYGRMS-FR |
S.NLL...FM..GL..ETK.QL.EEEKKI..EEH.YLDL......ES....EQ.FL..ED.L.G.MS.FR | |
Retrocopy | SWNLLHLNFMYSGLNRETK*QL-EEEKKITREEHGYLDLSV*R--ESFQTAEQRFLSSED-LRGGMS>FR |
Parental | GFNPEVEKLMLQMNGKKK |
GFN...EKLML.MN...K | |
Retrocopy | GFNTYIEKLMLPMNAERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .06 RPM |
SRP017611_liver | 0 .00 RPM | 4 .32 RPM |