RetrogeneDB ID: | retro_ocun_756 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:73409606..73409902(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSOCUG00000025258 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 63. % |
Parental protein coverage: | 83.05 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DGIPPP-YDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKK-Q |
DGIPP.....KK.MV.PA.L..V.LKP.R.FA.L..L.HE.G.KYQ.VT.TLE.KRKEK.KIH.RKKK.Q | |
Retrocopy | DGIPPA>FYDKKSMVAPATLNIVHLKPIRVFAFLEHLVHEIGRKYQVVTVTLE*KRKEKNKIHSRKKK>Q |
Parental | LMRLRKQAEKNVEKKISKFTDVLKTHGLLV |
L....KQ.E.NVEKK..KFT...KTH.LLV | |
Retrocopy | LVLPQKQVENNVEKKTDKFTELHKTHELLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 131 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 349 .17 RPM |
SRP017611_liver | 0 .00 RPM | 66 .52 RPM |