RetrogeneDB ID: | retro_ocun_762 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:97738866..97739198(-) | ||
Located in intron of: | ENSOCUG00000005835 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSOCUG00000008933 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 58.47 % |
Parental protein coverage: | 63.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | AVVLKRPEPLTDEVPYSVAAPCPLTPLLQSRSFQTSVVSRDIDTAAKFIG-AGAATVGVAGSGAGIGTVF |
A.VL.RP..LT.E.....A..CPL...LQ..SFQTS..S.DI.TA.KFIG.A.A..VGV....AG.G... | |
Retrocopy | ALVLRRPG*LTNECLSFLAVLCPLSSFLQGHSFQTSTISKDIGTAIKFIG>ARAIMVGV----AGPGAIL |
Parental | GSLIIGYA-RNPSLKQ-QLFSYAILGFALSEAMGLFCLMVAFLILFAM |
GSLIIGYA.R.PSL....L..Y.ILG.AL.E.MG.FCLMVA.LIL.AM | |
Retrocopy | GSLIIGYA<REPSLDA<MLLFYVILGLAL*ESMGCFCLMVACLILSAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 84 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .20 RPM |
SRP017611_liver | 0 .00 RPM | 40 .16 RPM |