RetrogeneDB ID: | retro_ocun_798 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:46625228..46625705(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027869 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUT | ||
Ensembl ID: | ENSOCUG00000003862 | ||
Aliases: | None | ||
Description: | deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078] |
Percent Identity: | 98.75 % |
Parental protein coverage: | 70.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KAPAISPSKRARAAEEGTMRLRFSRLSEHATAPTRGSARAAGYDLYSAYDYTVPPMEKAIVKTDIQIALP |
.APAISPSKRARAAEEGTMRLRFSRLSEHATAPTRGSARAAGYDLYSAYDYTVPPMEKAIVKTDIQIALP | |
Retrocopy | EAPAISPSKRARAAEEGTMRLRFSRLSEHATAPTRGSARAAGYDLYSAYDYTVPPMEKAIVKTDIQIALP |
Parental | SGCYGRIAPRSGLAAKYFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEEVKKGDRIAQLICERIFYPEIEE |
SGCYGRIAPRSGLAAKYFIDVGAGVIDEDYRGNVGVVLFNFGKEKFE.VKKGDRIAQLICERIFYPEIEE | |
Retrocopy | SGCYGRIAPRSGLAAKYFIDVGAGVIDEDYRGNVGVVLFNFGKEKFE-VKKGDRIAQLICERIFYPEIEE |
Parental | VQVLDDTERGAGGFGSTGKN |
VQVLDDTERGAGGFGSTGKN | |
Retrocopy | VQVLDDTERGAGGFGSTGKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .37 RPM | 13 .52 RPM |
SRP017611_kidney | 1 .72 RPM | 9 .83 RPM |
SRP017611_liver | 1 .31 RPM | 3 .55 RPM |