RetrogeneDB ID: | retro_ocun_799 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:48484802..48485191(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM216 | ||
Ensembl ID: | ENSOCUG00000001682 | ||
Aliases: | None | ||
Description: | transmembrane protein 216 [Source:HGNC Symbol;Acc:25018] |
Percent Identity: | 52.27 % |
Parental protein coverage: | 98.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LSSTPLEILFFLNGWYYATYFLLELFIFLYKGLLLPYPTANLVLDVVMLLLYLGIEVIRLF--FGTKGNL |
LSS..LEILFFLNG.YYATY.L.E.F.FLY..LLLPYPT..L.L................F..F..KGN. | |
Retrocopy | LSSASLEILFFLNG*YYATYLLPEFFLFLYESLLLPYPTVSLALXXXXXXXFSFVLELK*FSCFCYKGNP |
Parental | CQRKMPLGISVALSFP-SAMMASYYLLL-QTYVLRLEAVMNGILLFFCGSELLLEVLTLAAL |
...K..L.....L..P.S.M.AS..LLL..T..L.L.A.MNGILLF.CGSELL...L.LA.L | |
Retrocopy | LPMKEHL-VLLGLGLP>STMTASHCLLL>PTFMLLLKAIMNGILLFLCGSELLPDLLVLATL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 2 .65 RPM |
SRP017611_kidney | 0 .00 RPM | 3 .95 RPM |
SRP017611_liver | 0 .00 RPM | 0 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016592 | 1 retrocopy | |
Bos taurus | ENSBTAG00000021517 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016171 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000020362 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014169 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001682 | 1 retrocopy |
retro_ocun_799 ,
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