>retro_ocun_811
AGAAGAAAGCCCTCATCCGCGCTAACGGCTAACGGACTGAAGCTGGAAGCCATGTCGCAGGTGATCCAGGCCATGCCCTC
TGAGTTGAGCATCTCCTCTGCGATCCAGAACACGCACTCTGCCTCCAAAGGCCTACCTCTGAACCACGCTGCCTTGCCTC
CCTCAGACTACGACAGAAGTCCCTTTGTCACCTCCCCCATTAGCATGACAATGCCACCTCCTGGCAGCCTGCAAGGTTAC
CAAGCATATGGCCACTTTCCGAGCCGGGCTATCAAGTCTGAGTACCCGGACCCCTACAGCAGCTCTCCCGAGTCCATCCT
AGGCTACTCCTACGTGGACAGCTACCAGACCGGCTCCCCGGCCAGCATCCCGCAGCTCATCCTGGAACTTCTGAAGTGCG
AGCCGGAGGAGCCGCAGGTGCAGGCCAGGATCATGGCCTACTTGCAGCAGGAGCAGGCCAACCGGAGCAAGCACGAGAAG
CTGAGCACATTCGGGCTGATGTGCAAGATGGCGGACCAGACGCTCTTCTCCATCGTGGAGTGGGCCAGGAGTAGTATTTT
CTTCAGAGAACTTAAGGTTGACGACCAAATGAAGCTGCTTCAGAACTGTTGGAGTGAGCTCCTAATCCTGGACCACATTT
ACCGGCAGGTGGTGCACGGGAAGGAAGGATCCATCTACCTGGTTACTGGACAACAAGTGGACCACTCCATAATAACAGCA
CAAGCAGGTGCCACGCTCAACAACCTCATGAGTCATGCCCAGGAGTTGGTGGTAAAACTTCGCTCTCTCCAGTTTGATCA
ACGGGAATTTGTGTGTCTGAAATTCTTGGTGCTCTTTAGTTTAGATGTCAAAAATCTTGAGAACTTCCAGCTGGTAGAAG
GTGTTCAGGAACAAGTGAACGCTGCCCTCCTGGACTACACCATGTGTAACTACCCGCAGCAGACAGAGAAGTTCGGGCAG
CTCCTGCTGCGACTTCCGGAAATCCGGGCCATCAGCATGCAAGCTGAAGAATACCTCTACTACAAGCACCTGAACGGGGA
CGTGCCCTACAATAACCTCCTCATTGAGATGCTGCATGCGAAAAGAGCC
ORF - retro_ocun_811 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
96.97 % |
Parental protein coverage: |
67.1 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | KQQKKALIRANGLKLEAMSQVIQAMPSELSISSAIQNMHSASKGLPLNHAALPPSDYDRSPFVTSPISMT |
| .........ANGLKLEAMSQVIQAMPSELSISSAIQN.HSASKGLPLNHAALPPSDYDRSPFVTSPISMT |
Retrocopy | RRKPSSALTANGLKLEAMSQVIQAMPSELSISSAIQNTHSASKGLPLNHAALPPSDYDRSPFVTSPISMT |
|
Parental | MPPPGSLQGYQAYGHFPSRAIKSEYPDPYSSSPESILGYSYVDSYQTGSPASIPQLILELLKCEPEEPQV |
| MPPPGSLQGYQAYGHFPSRAIKSEYPDPYSSSPESILGYSYVDSYQTGSPASIPQLILELLKCEPEEPQV |
Retrocopy | MPPPGSLQGYQAYGHFPSRAIKSEYPDPYSSSPESILGYSYVDSYQTGSPASIPQLILELLKCEPEEPQV |
|
Parental | QARIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLIL |
| QARIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLIL |
Retrocopy | QARIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLIL |
|
Parental | DHIYRQVVHGKEGSIYLVTGQQVDHSIIAAQAGATLNNLMSHAQELVVKLRSLQFDQREFVCLKFLVLFS |
| DHIYRQVVHGKEGSIYLVTGQQVDHSII.AQAGATLNNLMSHAQELVVKLRSLQFDQREFVCLKFLVLFS |
Retrocopy | DHIYRQVVHGKEGSIYLVTGQQVDHSIITAQAGATLNNLMSHAQELVVKLRSLQFDQREFVCLKFLVLFS |
|
Parental | LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPY |
| LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPY |
Retrocopy | LDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPY |
|
Parental | NNLLIEMLHAKRA |
| NNLLIEMLHAKRA |
Retrocopy | NNLLIEMLHAKRA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .11 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .51 RPM |
SRP017611_liver |
0 .85 RPM |
12 .18 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_811 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_811 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_811 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.