RetrogeneDB ID: | retro_ocun_813 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:94059130..94059462(+) | ||
Located in intron of: | ENSOCUG00000013272 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRAPPC6B | ||
Ensembl ID: | ENSOCUG00000002171 | ||
Aliases: | None | ||
Description: | trafficking protein particle complex 6B [Source:HGNC Symbol;Acc:23066] |
Percent Identity: | 77.68 % |
Parental protein coverage: | 69.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNH-QGIYVLQDNKFRLLTQMSAGKQYLEHASK |
E.FTKDTARF.DE.DI.K.ICK.FWTTVFKKQID.LR.NH.QGIYVLQDN.F.LLTQ...GKQ.LE..SK | |
Retrocopy | EGFTKDTARFMDE*DITKLICKSFWTTVFKKQIDTLRKNH>QGIYVLQDNRFHLLTQIPEGKQCLEYTSK |
Parental | YLAFTCGLIRGGLSNLGIKSIV-TAEVSSMPACKFQVMIQKL |
YLAFT.GLIRGGLSNL.IK..V.TA..SSMPACKF.VMIQKL | |
Retrocopy | YLAFTGGLIRGGLSNLSIKRTV>TAALSSMPACKFPVMIQKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 16 .17 RPM |
SRP017611_kidney | 0 .10 RPM | 11 .96 RPM |
SRP017611_liver | 0 .00 RPM | 6 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000013828 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002627 | 2 retrocopies | |
Mus musculus | ENSMUSG00000020993 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002171 | 1 retrocopy |
retro_ocun_813 ,
|
Sarcophilus harrisii | ENSSHAG00000001400 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002897 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003331 | 1 retrocopy |