RetrogeneDB ID: | retro_ocun_836 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:62984648..62985026(-) | ||
Located in intron of: | ENSOCUG00000013327 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DYNLT3 | ||
Ensembl ID: | ENSOCUG00000009787 | ||
Aliases: | None | ||
Description: | dynein, light chain, Tctex-type 3 [Source:HGNC Symbol;Acc:11694] |
Percent Identity: | 88.1 % |
Parental protein coverage: | 78.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | APPPGRVGATMEEYHRHCDEVGFNADEAHNIVKECVDGVLGGEDYNQNNINQWTASIVEQSLTHLVKLGK |
AP.PGRV..TMEEYH.HCDEVGFNADEAHNIVKECVDGVLGGED.NQNNINQWTA.IVE..LT.LVKL.K | |
Retrocopy | APTPGRVSTTMEEYHCHCDEVGFNADEAHNIVKECVDGVLGGEDCNQNNINQWTAGIVEEFLTYLVKLVK |
Parental | AYKYIVTCAVVQRSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAIVL |
AYKYIVT.AV.QRSAYGFHTASS.FWD.TSDGTCTVRWENRTMNCIVNVFAIA.VL | |
Retrocopy | AYKYIVTGAVIQRSAYGFHTASSWFWDSTSDGTCTVRWENRTMNCIVNVFAIAVVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 20 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .36 RPM |
SRP017611_liver | 0 .00 RPM | 1 .23 RPM |