>retro_ocun_85
ATGGTGGAGGTGGAGGAACAGCAACAGTCATGGAAGACAGACTTTTACTTGGAACTACCAAAAGTGGAACTTCATGCCCA
CTTGAATGGATCCATTAGTTCTAATACCATGAAGAAGTTAATAGCCAAGAAGCCAGACTTTAAAATCCACGATGAGATGA
CTATGATTGATAAAGGAAAGAAAAGAACTCTTGAAGAATGTTTCCAGATGTTTCAGATAATTCATCAGCTTACTACTAGT
CCTGAAGATATTCTAATGATCACAAAAGATGTCATTAAAGAATTTTCGGATGATGGTGTCACATACCTGGAACTAAGGAG
CACTCCCAGAAGAGAAAATGCTATTGGAATGACTAAAAAGAGTTATGTGGAATCTATACTTGAGGGTATAAAACAGTCCA
AACAAGAAAACTTAGACATCAATGTTAGGTATTTGATAGCAATCGGCAGAAGAGGCGGCCCTTCAGTTGCCAAGGAGACT
GTTAAACTTGCGGAGGAGTTCTTCCTTTCTGCTGAGGATGTAGCTCTTGGCCTTGACCTTAGTGGAGACCCTACTATAGG
ACGAGCAGAAGACTTCTTGGAACCTCTTTTAGAAGCTAAAAATGCAGGTCTGAAGTTGGCGTTGCATCTTTCAGAGATCC
CAAACCAAGGAAAAGAAACCCAAATGTTCCTGGACCTACTTCCTGACAGAATTGGGCATGGAACTTTCCTCAACTCTTCT
GAGGGAGGATCCCTGGATCTGGTGGACTTTGTGAGGCAACATTGGATAACTCTGCAACTGTGTTTGACCTCAAACATCAA
AAGTCAGACAGTTCCATCTTATGACCAGCATCATTTCGGATTCTGGTACAGCATTGCACATCCTTCTGTGACCTGTACTG
ATGATAAAGGTGTTTTTGCAACATACCTTTCTCAAGAGTACCGGCTGGAAGCTGAAACATTTAATTTGACCCAGTCTCAG
GTGTGGGATTTATCGTATGAATCCATCAACTACATCTTTGCTTCTGATAGCACCAGATCTGAACTGAGGAAGAAGTGGAA
TAATCTGAAGCCCAAAGTGCTACAATTTTAA
ORF - retro_ocun_85 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.94 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MVEVEEQHQSWKTDFYLELPKVELHAHLNGSISSNTMKKLIAKKPDFKIHDEMTMIEKGKKRTLEECFQM |
| MVEVEEQ.QSWKTDFYLELPKVELHAHLNGSISSNTMKKLIAKKPDFKIHDEMTMI.KGKKRTLEECFQM |
Retrocopy | MVEVEEQQQSWKTDFYLELPKVELHAHLNGSISSNTMKKLIAKKPDFKIHDEMTMIDKGKKRTLEECFQM |
|
Parental | FQIIHQLTTSPEDILMITKDVIKEFADDGVKYLELRSTPRRENATGMTKKSYVESILEGIKQAKQENLDI |
| FQIIHQLTTSPEDILMITKDVIKEF.DDGV.YLELRSTPRRENA.GMTKKSYVESILEGIKQ.KQENLDI |
Retrocopy | FQIIHQLTTSPEDILMITKDVIKEFSDDGVTYLELRSTPRRENAIGMTKKSYVESILEGIKQSKQENLDI |
|
Parental | DVRYLIAIDRRGGPSVAKETVKLAEEFFLSTEDVVLGLDLSGDPTIGQAEDFLEPLLEAKNAGLKLALHL |
| .VRYLIAI.RRGGPSVAKETVKLAEEFFLS.EDV.LGLDLSGDPTIG.AEDFLEPLLEAKNAGLKLALHL |
Retrocopy | NVRYLIAIGRRGGPSVAKETVKLAEEFFLSAEDVALGLDLSGDPTIGRAEDFLEPLLEAKNAGLKLALHL |
|
Parental | SEIPNQGKETQMLLDLLPDRIGHGTFLNSSEGGSLDLVDFVRQHRIPLELCLTSNIKSQTVPSYDQHHFG |
| SEIPNQGKETQM.LDLLPDRIGHGTFLNSSEGGSLDLVDFVRQH.I.L.LCLTSNIKSQTVPSYDQHHFG |
Retrocopy | SEIPNQGKETQMFLDLLPDRIGHGTFLNSSEGGSLDLVDFVRQHWITLQLCLTSNIKSQTVPSYDQHHFG |
|
Parental | FWYSIAHPSVICTDDKGVFATYLSQEYRLAAETFNLTQSQVWDLSYESINYIFASDSTRSELRKKWNHLK |
| FWYSIAHPSV.CTDDKGVFATYLSQEYRL.AETFNLTQSQVWDLSYESINYIFASDSTRSELRKKWN.LK |
Retrocopy | FWYSIAHPSVTCTDDKGVFATYLSQEYRLEAETFNLTQSQVWDLSYESINYIFASDSTRSELRKKWNNLK |
|
Parental | PKVLQF |
| PKVLQF |
Retrocopy | PKVLQF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .11 RPM |
3 .37 RPM |
SRP017611_kidney |
0 .20 RPM |
2 .94 RPM |
SRP017611_liver |
0 .00 RPM |
0 .92 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_85 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_85 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_85 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.