RetrogeneDB ID: | retro_ocun_874 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 16:49267517..49267949(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS10 | ||
Ensembl ID: | ENSOCUG00000011373 | ||
Aliases: | None | ||
Description: | ribosomal protein S10 [Source:HGNC Symbol;Acc:10383] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 64. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SFPASAPNPTAAAMLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGY |
SFPA..PNPTAAAMLMPKKN.IA.YELLFKEGVMVAKKDVH.PKHPELADKNV.NLHVMKAMQSLKS.GY | |
Retrocopy | SFPALPPNPTAAAMLMPKKNHIAFYELLFKEGVMVAKKDVHRPKHPELADKNVANLHVMKAMQSLKSGGY |
Parental | VKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTY |
VKEQFA.RHFYWYLTNEGIQY.RDYL.LPP.IVPATL.RSRPET.RP.PKGLEGERPARLTRGEADRD.Y | |
Retrocopy | VKEQFA*RHFYWYLTNEGIQYPRDYLCLPPKIVPATLCRSRPETVRPSPKGLEGERPARLTRGEADRDKY |
Parental | RRSA |
RR.A | |
Retrocopy | RRCA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 108 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 186 .50 RPM |
SRP017611_liver | 0 .00 RPM | 52 .57 RPM |