RetrogeneDB ID: | retro_ocun_939 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:37401973..37402279(-) | ||
Located in intron of: | ENSOCUG00000003488 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000014878 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.86 % |
Parental protein coverage: | 77.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LEGIA-PEDQVVLLAGTPLEDEATLGQCGVEALSTLEVAGRMLGGKVHGSLARV-GKVRGQTLKVAKQEK |
LEGIA..E.QVVL.A.T.LEDEATLGQCG.EA....EVAG.MLGGKVHG.LA...GKVR.QT.KVAKQ.K | |
Retrocopy | LEGIA<LEGQVVLPADTLLEDEATLGQCGMEAVTSSEVAGHMLGGKVHGILAGA>GKVRVQTPKVAKQSK |
Parental | KKKRTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS |
K.K..G.AK...Q.N...VN.........GPNANS | |
Retrocopy | KRKK-GQAKWWVQ*NWHCVNWHCAHFWQEGPNANS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 68 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 117 .07 RPM |
SRP017611_liver | 0 .00 RPM | 60 .20 RPM |