RetrogeneDB ID: | retro_ocun_99 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 4:57827048..57827426(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023687 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002392 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.8 % |
Parental protein coverage: | 97.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW |
A.K....KKGRSAINEVVTREYTINIHKRIHGVGFKK.APRALKEIRKFAMK.MGTPDV.IDTRLNKAVW | |
Retrocopy | AAKKSSEKKGRSAINEVVTREYTINIHKRIHGVGFKKHAPRALKEIRKFAMKDMGTPDVCIDTRLNKAVW |
Parental | AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
AKGIRNVPYRI.VRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT.NVDEN | |
Retrocopy | AKGIRNVPYRIHVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTFNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .07 RPM |
SRP017611_liver | 0 .00 RPM | 19 .35 RPM |