RetrogeneDB ID:

retro_ogar_207

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873520.1:5864306..5866226(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000029060
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000010518
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_207
ATGGGACGGAGATCCACATCATCCACCAAGAGCGGAAAATTTATGAACCCTACAGACCAAGCTCGAAAGGAAGCCCGGAA
GAGAGAATTAAAGAAGAACAAAAAACAGCGCATGATGGTACGAGCTGCAGTTCTGAAGATGAAGGATCCCAAACAGATTA
TCCGGGACATGGAGAAATTGGATGAAATGGAGTTTAACCCAGTACAACAGCCACAGTTAAATGAGAAAGTACTGAAAGAT
AAGCGTAAAAAGCTGCGTGAAACCTTTGAACGTATTCTACGACTCTATGAAAAAGAGAATCCAGATATTTACAAAGAGCT
GAGAAAGCTGGAAGTAGAATATGAACAGAAGAGAGCTCAACTTAGCCAGTATTTTGATGCTGTCAAGAATGCTCAGCATG
TGGAAGTGGAGAGTATTCCTTTGCCAGATATGCCACATGCACCTTCAAACATTTTGATCCAGGACATTCCACTACCTGGT
GCCCAGCCACCCTCTATTCTTAAGAAAACCTCAGCCTATGGACCTCCAACTCGGGCAGTTTCTATCCTTCCTCTTCTCGG
ACATGGTGTTCCACGTTTGCCCCCAGGCAGAAAACGTCCTGGCCCTCCCCCTGGTCCACCTCCTCTTCAAGTCTTGCAGA
TGTATGGCCATAAAGTGGGTTTTGCCCTGGATCTTCCTTCTCGTAGAGGAGAGGAAGACATGTTATATACTCCTGAACTT
GCTCCGCGGGGTCATGATGATGGTGTTTCCAGCACCAGTGAAGAAGATGGTTATCCTGAGAACATGGATCAAGATAAGCA
TGATGACAGTACTGATGACAGTGACACTGACAGATCAGATGGAGGAAATGAGGGGGATGAATTTGTACACCATGATGATG
AAAGAGACAACATTGAAGGAAAAAAGTCAGGTCTAAGTGTACAATTTGCAGATATGCCAGAAAAATCAAGGAAAAAAAAG
AACATGAAGGAGCTAACTCCCCTTCAAGCCATGATGCTTCGCATGGCAGGTCAGGAAATCCCTGAGGAGGGACGGGAAGT
AGAAGAATTTTCAGAGGATGATGATGCGGATGATACTGATGACTCTGAAGCAGAAAAACAATCACAGAAACAGCATAAAG
AGGAAGCTCATTCTGATGGCAGATCTACTGCTTCTTCCCAGCAGCAGGCTCCCCCACAGTCTGTTGCTCCTTCTCAGATA
CAAGCACCTCCCATGCCAGGACCATCTCCTCTTGGATCACCACCTGCTTCACCTTTACGGCCTCCTGGACCACCTACAGG
CCTTCCTCCAGGACCACCTCCAGGAGCGCCTCCATTCCTGAGACCACCTGGAATGCCAGGACTCCGAGGGCCTTTACCCC
GACTTTTACCTCCAGGACCACCAGCAGGCCGGCCCCCTGGCCCTCCCCCAGGTCCACCTCCAGGTTTGCCTCCTGGCCCT
CCTCCTCGGGGACCTCCACCAAGGCTACCTCCCCCTGCACCTCCAGGTATCCCTCTACCACGTCCTGGCATGATGCGCCC
ACCTTTGCTGCCTCCACTTGGACCTGCCCACCCTGGGCTTTTCCCACCAGCTCCCTTGCTGAACCCTGGGGTTTTAAGTG
CCCCACCCAACTTGATTCAGCGACCCAAGGCAGATGATACAAGGGCAGCCACCATTGAGAAGAAAGCCACAGCAACCATC
AGTGCCAAGCCACAGATCACTAATCCCAAGGCAGAGATTACTCGCTTTGTGCCCACTGCACTGAGAGTACGTCGAGAAAA
TAAAGGGGCTACTTCTACTCCCCAAAGAAAATCAGAGGATGATTCTGCTGTGCCTCTTACCAAAGCAGCCCCCAAATCTG
GTCCTTCTATTCCTGTGTCAGTACAAACTAAGGATGATGTATATGAAGCTTTCATGAAAGAGATGGAAGGGCTACTGTGA

ORF - retro_ogar_207 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.53 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQ
MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQ
RetrocopyMGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQ
ParentalPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIP
PQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIP
RetrocopyPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIP
ParentalLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGPPPPQ
LPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRK.PGPPPGPPP.Q
RetrocopyLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKRPGPPPGPPPLQ
ParentalVLQMYGRKVGFALDLPSRRRDEDMLYSPELAQRGHDDDVSSTSEDDGYPEDMDQDKHDDSTDDSDTDRSD
VLQMYG.KVGFALDLPSRR..EDMLY.PELA.RGHDD.VSSTSE.DGYPE.MDQDKHDDSTDDSDTDRSD
RetrocopyVLQMYGHKVGFALDLPSRRGEEDMLYTPELAPRGHDDGVSSTSEEDGYPENMDQDKHDDSTDDSDTDRSD
ParentalGESDGDEFVHRDDERDNNEEKKSGLSVRFADMPGKSRKKKKNMKELTPLQAMMLRMAGQEIPEEGREVEE
G...GDEFVH.DDERDN.E.KKSGLSV.FADMP.KSRKKK.NMKELTPLQAMMLRMAGQEIPEEGREVEE
RetrocopyGGNEGDEFVHHDDERDNIEGKKSGLSVQFADMPEKSRKKK-NMKELTPLQAMMLRMAGQEIPEEGREVEE
ParentalFSEDDDEDDSDDSEAEKQSQKQHKEEAHSDGTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPL
FSEDDD.DD.DDSEAEKQSQKQHKEEAHSDG.STASSQQQAPPQSV.PSQIQAPPMPGP.PLG.PPA.PL
RetrocopyFSEDDDADDTDDSEAEKQSQKQHKEEAHSDGRSTASSQQQAPPQSVAPSQIQAPPMPGPSPLGSPPASPL
ParentalRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRL
RPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPP.GRPPGPPPGPPPGLPPGPPPRGPPPRL
RetrocopyRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPAGRPPGPPPGPPPGLPPGPPPRGPPPRL
ParentalPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTSAATIEKKATAT
PPPAPPGIP.PRPGMMRPPL.PPLGPA.PGLFPPAPL.NPGVLSAPPNLIQRPKADDT.AATIEKKATAT
RetrocopyPPPAPPGIPLPRPGMMRPPLLPPLGPAHPGLFPPAPLLNPGVLSAPPNLIQRPKADDTRAATIEKKATAT
ParentalISAKPQITNPKAEITRFVPTALRVRRENKGATSAPQRKSEDDSAVPLAKAAPKSGPSVPVSVQTKDDVYE
ISAKPQITNPKAEITRFVPTALRVRRENKGATS.PQRKSEDDSAVPL.KAAPKSGPS.PVSVQTKDDVYE
RetrocopyISAKPQITNPKAEITRFVPTALRVRRENKGATSTPQRKSEDDSAVPLTKAAPKSGPSIPVSVQTKDDVYE
ParentalAFMKEMEGLL
AFMKEMEGLL
RetrocopyAFMKEMEGLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_207 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 22 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000147591 retrocopy
retro_btau_20,
Canis familiaris ENSCAFG000000129262 retrocopies
retro_cfam_1369, retro_cfam_1911,
Callithrix jacchus ENSCJAG000000216111 retrocopy
retro_cjac_1737,
Homo sapiens ENSG000000844632 retrocopies
retro_hsap_1878, retro_hsap_4719,
Gorilla gorilla ENSGGOG000000044483 retrocopies
retro_ggor_1375, retro_ggor_1711, retro_ggor_2932,
Macropus eugenii ENSMEUG000000139711 retrocopy
retro_meug_1952,
Myotis lucifugus ENSMLUG000000152161 retrocopy
retro_mluc_1074,
Macaca mulatta ENSMMUG000000192991 retrocopy
retro_mmul_1329,
Monodelphis domestica ENSMODG000000179491 retrocopy
retro_mdom_143,
Mustela putorius furoENSMPUG000000116191 retrocopy
retro_mputfur_280,
Mus musculus ENSMUSG000000302161 retrocopy
retro_mmus_2740,
Nomascus leucogenys ENSNLEG000000039261 retrocopy
retro_nleu_2651,
Oryctolagus cuniculus ENSOCUG000000171771 retrocopy
retro_ocun_974,
Otolemur garnettii ENSOGAG00000010518 1 retrocopy
retro_ogar_207 ,
Ochotona princeps ENSOPRG000000150083 retrocopies
retro_opri_107, retro_opri_1159, retro_opri_678,
Pongo abelii ENSPPYG000000043233 retrocopies
retro_pabe_1558, retro_pabe_2099, retro_pabe_3663,
Pan troglodytes ENSPTRG000000047243 retrocopies
retro_ptro_1260, retro_ptro_1637, retro_ptro_3136,
Rattus norvegicus ENSRNOG000000055053 retrocopies
retro_rnor_1287, retro_rnor_2726, retro_rnor_741,
Rattus norvegicus ENSRNOG000000495931 retrocopy
retro_rnor_740,
Sorex araneus ENSSARG000000070851 retrocopy
retro_sara_753,
Sarcophilus harrisii ENSSHAG000000166491 retrocopy
retro_shar_81,
Tupaia belangeri ENSTBEG000000033941 retrocopy
retro_tbel_2213,


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